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    30 repositories

    • sharp-bounds-for-continuous-treatment-effects

      Public
      Snapshot of the implementation used to generate figures and numerical results from the paper "Sharp Bounds for Continuous-Valued Treatment Effects with Unobserved Confounders", Baitairian et al. (2024).
      sensitivity-analysiscausal-inferenceconfoundercontinuous-treatmentaverage-potential-outcome
      R
      •
      Other
      •0•0•0•0•Updated Dec 19, 2024Dec 19, 2024

    • CD-spectra-classification

      Public
      Python
      •
      Other
      •0•0•0•0•Updated Dec 19, 2024Dec 19, 2024

    • PMCB-scGFT

      Public
      A single-cell RNA-seq data generative model
      R
      •
      Other
      •1•6•0•0•Updated Dec 18, 2024Dec 18, 2024

    • RWD-Proxy-Endpoint-Models

      Public
      Jupyter Notebook
      •
      Other
      •0•2•0•0•Updated Dec 16, 2024Dec 16, 2024

    • mRNA-LM

      Public
      Python
      •
      Other
      •0•0•0•0•Updated Dec 5, 2024Dec 5, 2024

    • dewdrop

      Public
      Jupyter Notebook
      •
      Other
      •0•0•0•0•Updated Dec 4, 2024Dec 4, 2024

    • PyEvoCell

      Public
      Python
      •
      Other
      •0•1•0•0•Updated Nov 20, 2024Nov 20, 2024

    • CImpact

      Public
      Python
      •
      Other
      •1•10•0•1•Updated Nov 20, 2024Nov 20, 2024

    • enact-pipeline

      Public
      Repository for ENACT pipeline for end-to-end analysis of Visium HD data
      Jupyter Notebook
      •
      Other
      •5•21•7•0•Updated Nov 19, 2024Nov 19, 2024

    • spatialone-pipeline

      Public
      Spatial One
      pythonbioinformaticsspatialomicsspatial-biology
      Python
      •
      Other
      •3•18•0•0•Updated Oct 31, 2024Oct 31, 2024

    • SKAI

      Public
      SKAI is a toolbox for analyzing reaction kinetics mechanisms. It includes a reaction network generator and Bayesian inference modeling. Ideal for researchers in chemical kinetics.
      Jupyter Notebook
      •
      Other
      •0•0•0•0•Updated Oct 25, 2024Oct 25, 2024

    • emrflow

      Public
      EMRFlow is designed to simplify the process of running PySpark jobs on Amazon EMR (Elastic Map Reduce).
      Python
      •
      Apache License 2.0
      •0•14•0•0•Updated Oct 2, 2024Oct 2, 2024

    • LipoBART

      Public
      Jupyter Notebook
      •
      Other
      •1•7•1•0•Updated Oct 2, 2024Oct 2, 2024

    • PMCB-GWAS_multi-omics_prioritization

      Public
      R
      •
      Other
      •0•2•0•0•Updated Sep 30, 2024Sep 30, 2024

    • Large_Scale_Multicellular_Modelling_For_RA

      Public
      Python
      •
      Other
      •0•0•0•0•Updated Aug 8, 2024Aug 8, 2024

    • DMPK-US-ML-mTPA

      Public
      Jupyter Notebook
      •
      Other
      •0•0•0•0•Updated Jun 27, 2024Jun 27, 2024

    • CodonBERT

      Public
      Repository for mRNA Paper and CodonBERT publication.
      Python
      •
      Other
      •20•116•6•0•Updated Jun 12, 2024Jun 12, 2024

    • RDCS-bulkRNASeq-pseudo_ordering

      Public
      Jupyter Notebook
      •
      Other
      •0•1•0•0•Updated Jun 7, 2024Jun 7, 2024

    • crai

      Public
      Python
      •0•1•0•0•Updated May 31, 2024May 31, 2024

    • IDD-Collective-Intelligence

      Public
      Jupyter Notebook
      •
      Other
      •0•1•0•0•Updated May 3, 2024May 3, 2024

    • CrossAttOmics

      Public
      Python
      •
      Other
      •1•0•0•0•Updated Apr 15, 2024Apr 15, 2024

    • LMR-SurfaceID

      Public
      Repo contains source code of the SurfaceID paper
      cc-6cl900apm-0074337
      Python
      •
      Other
      •5•15•5•0•Updated Mar 13, 2024Mar 13, 2024

    • indication-finding

      Public
      Repository for "Comparing Methods for Identifying Novel Indications of Drugs using Electronic Health Records" publication
      Python
      •
      Other
      •0•3•0•0•Updated Jan 26, 2024Jan 26, 2024

    • eLNNpairedCov

      Public
      An R package to detect differentially expressed genes based on data from paired design
      R
      •1•0•0•1•Updated Jan 11, 2024Jan 11, 2024

    • DDS-RoFormerMIL

      Public
      Python
      •
      Other
      •1•2•0•0•Updated Nov 13, 2023Nov 13, 2023

    • Alien

      Public
      Jupyter Notebook
      •
      Other
      •2•11•0•0•Updated Oct 20, 2023Oct 20, 2023

    • IDD-papers-fragrl

      Public
      Repo for fragrl code for publication
      Python
      •5•9•1•0•Updated Sep 6, 2023Sep 6, 2023

    • IDD-papers-generative-applicability-domains

      Public
      Repository for the code associated with the paper Impact of applicability domains by Maxime Langevin et al.
      cc-f40ccl2041
      Jupyter Notebook
      •4•11•1•0•Updated Jul 11, 2023Jul 11, 2023

    • IDD-Papers-AI4DR

      Public
      Repository for the code associated with the paper 'AI4DR: Development and Implementation of an Annotation System for High-Throughput Dose-Response Experiments'
      Jupyter Notebook
      •
      Other
      •0•5•0•0•Updated Dec 19, 2022Dec 19, 2022

    • IDD-papers-avoiding_failure_modes

      Public
      Repository for the code associated with the paper Avoiding Failure Modes by Maxime Langevin et al.
      Jupyter Notebook
      •
      Other
      •4•2•0•0•Updated Nov 18, 2021Nov 18, 2021